Found 12 results
Author Title [ Type(Asc)] Year
Filters: Keyword is Computational Biology  [Clear All Filters]
Journal Article
S. Naithani, Geniza, M., and Jaiswal, P., Variant Effect Prediction Analysis Using Resources Available at Gramene Database., Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 279-297, 2017.
J. J. Loor, Vailati-Riboni, M., McCann, J. C., Zhou, Z., and Bionaz, M., TRIENNIAL LACTATION SYMPOSIUM: Nutrigenomics in livestock: Systems biology meets nutrition., J Anim Sci, vol. 93, no. 12, pp. 5554-74, 2015.
T. M. Grala, Kay, J. K., Phyn, C. V. C., Bionaz, M., Walker, C. G., Rius, A. G., Snell, R. G., and Roche, J. R., Reducing milking frequency during nutrient restriction has no effect on the hepatic transcriptome of lactating dairy cattle., Physiol Genomics, vol. 45, no. 23, pp. 1157-67, 2013.
S. Naithani, Preece, J., D’Eustachio, P., Gupta, P., Amarasinghe, V., Dharmawardhana, P. D., Wu, G., Fabregat, A., Elser, J. L., Weiser, J., Keays, M., Fuentes, A. Munoz- Pome, Petryszak, R., Stein, L. D., Ware, D., and Jaiswal, P., Plant Reactome: a resource for plant pathways and comparative analysis., Nucleic acids research, vol. 45, pp. D1029-D1039, 2018.
S. Naithani and Jaiswal, P., Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study., Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.
L. Truong, Reif, D. M., St Mary, L., Geier, M. C., Truong, H. D., and Tanguay, R. L., Multidimensional in vivo hazard assessment using zebrafish., Toxicol Sci, vol. 137, no. 1, pp. 212-33, 2014.
D. H. Ware, Jaiswal, P., Ni, J., Yap, I. V., Pan, X., Clark, K. Y., Teytelman, L., Schmidt, S. C., Zhao, W., Chang, K., Cartinhour, S., Stein, L. D., and McCouch, S. R., Gramene, a tool for grass genomics., Plant physiology, vol. 130, pp. 1606-13, 2002.
The Gene Ontology in 2010: extensions and refinements., Nucleic acids research, vol. 38, pp. D331-5, 2010.
K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling.., BMC Genomics, vol. 10, p. 542, 2009.
P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development., BMC Genomics, vol. 11, p. 331, 2010.
A. C Quandt, Di, Y., Elser, J., Jaiswal, P., and Spatafora, J. W., Differential Expression of Genes Involved in Host Recognition, Attachment, and Degradation in the Mycoparasite Tolypocladium ophioglossoides., G3 (Bethesda, Md.), vol. 6, pp. 731-41, 2016.
S. C. Tilton, Tal, T. L., Scroggins, S. M., Franzosa, J. A., Peterson, E. S., Tanguay, R. L., and Waters, K. M., Bioinformatics Resource Manager v2.3: an integrated software environment for systems biology with microRNA and cross-species analysis tools., BMC Bioinformatics, vol. 13, p. 311, 2012.