College of Agricultural Sciences

D. E. Graugnard, Piantoni, P., Bionaz, M., Berger, L. L., Faulkner, D. B., and Loor, J. J., “Adipogenic and energy metabolism gene networks in longissimus lumborum during rapid post-weaning growth in Angus and Angus x Simmental cattle fed high-starch or low-starch diets.”, BMC Genomics, vol. 10, p. 142, 2009.

J. S. Osorio, Lohakare, J., and Bionaz, M., “Biosynthesis of milk fat, protein, and lactose: roles of transcriptional and posttranscriptional regulation.”, Physiol Genomics, vol. 48, no. 4, pp. 231-56, 2016.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Everts, R. E., Rodriguez-Zas, S. L., Lewin, H. A., Hurley, H. L., Akers, M., and Loor, J. J., “Functional and gene network analyses of transcriptional signatures characterizing pre-weaned bovine mammary parenchyma or fat pad uncovered novel inter-tissue signaling networks during development.”, BMC Genomics, vol. 11, p. 331, 2010.

P. Piantoni, Bionaz, M., Graugnard, D. E., Daniels, K. M., Akers, M., and Loor, J. J., “Gene expression ratio stability evaluation in prepubertal bovine mammary tissue from calves fed different milk replacers reveals novel internal controls for quantitative polymerase chain reaction.”, J Nutr, vol. 138, no. 6, pp. 1158-64, 2008.

K. M. Moyes, Drackley, J. K., Morin, D. E., Bionaz, M., Rodriguez-Zas, S. L., Everts, R. E., Lewin, H. A., and Loor, J. J., “Gene network and pathway analysis of bovine mammary tissue challenged with Streptococcus uberis reveals induction of cell proliferation and inhibition of PPARgamma signaling..”, BMC Genomics, vol. 10, p. 542, 2009.

M. Bionaz and Loor, J. J., “Gene networks driving bovine milk fat synthesis during the lactation cycle.”, BMC Genomics, vol. 9, p. 366, 2008.

M. Bionaz and Loor, J. J., “Identification of reference genes for quantitative real-time PCR in the bovine mammary gland during the lactation cycle.”, Physiol Genomics, vol. 29, no. 3, pp. 312-9, 2007.

K. Shahzad, Bionaz, M., Trevisi, E., Bertoni, G., Rodriguez-Zas, S. L., and Loor, J. J., “Integrative analyses of hepatic differentially expressed genes and blood biomarkers during the peripartal period between dairy cows overfed or restricted-fed energy prepartum.”, PLoS One, vol. 9, no. 6, p. e99757, 2014.

S. Naithani, Gupta, P., Preece, J., Garg, P., Fraser, V., Padgitt-Cobb, L. K., Martin, M., Vining, K., and Jaiswal, P., “Involving community in genes and pathway curation.”, Database : the journal of biological databases and curation, vol. 2019, 2019.

S. Naithani and Jaiswal, P., “Pathway Analysis and Omics Data Visualization Using Pathway Genome Databases: FragariaCyc, a Case Study.”, Methods in molecular biology (Clifton, N.J.), vol. 1533, pp. 241-256, 2017.

L. Truong, Tilton, S. C., Zaikova, T., Richman, E., Waters, K. M., Hutchison, J. E., and Tanguay, R. L., “Surface functionalities of gold nanoparticles impact embryonic gene expression responses.”, Nanotoxicology, vol. 7, no. 2, pp. 192-201, 2013.

M. Bionaz, Monaco, E., and Wheeler, M. B., “Transcription Adaptation during In Vitro Adipogenesis and Osteogenesis of Porcine Mesenchymal Stem Cells: Dynamics of Pathways, Biological Processes, Up-Stream Regulators, and Gene Networks.”, PLoS One, vol. 10, no. 9, p. e0137644, 2015.

E. Monaco, Bionaz, M., Rodriguez-Zas, S., Hurley, W. L., and Wheeler, M. B., “Transcriptomics comparison between porcine adipose and bone marrow mesenchymal stem cells during in vitro osteogenic and adipogenic differentiation.”, PLoS One, vol. 7, no. 3, p. e32481, 2012.